Genetics: From Genes to Genomes
Genetics: From Genes to Genomes
6th Edition
ISBN: 9781259700903
Author: Leland Hartwell Dr., Michael L. Goldberg Professor Dr., Janice Fischer, Leroy Hood Dr.
Publisher: McGraw-Hill Education
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Chapter 9, Problem 8P

The linear bacteriophage λ genomic DNA has at each end a single-strand extension of 20 bases. (These are sticky ends but are not, in this case, produced by restriction enzyme digestion.) These sticky ends can be ligated to form a circular piece of λ DNA. In a series of separate tubes, either the linear or circular forms of the DNA are digested to completion with EcoRI, BamHI, or a mixture of the two enzymes. The results are shown here.

Chapter 9, Problem 8P, The linear bacteriophage  genomic DNA has at each end a single-strand extension of 20 bases. These

a. Which of a. the samples (A or B) represents the circular form of the DNA molecule? How do you know?
b. What is the total length of the linear form of the λ DNA molecule?
c. What is the total length of the circular form of the λ DNA molecule?
d. Draw diagrams of the circular and linear λ DNA molecules, showing the locations of the EcoRI and BamHI sites.
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The partial sequence of one strand of a double-stranded DNA molecule is5′ – – – GACGAAGTGCTGCAGAAAGTCCGCGTTATAGGCATGAATTCCTGAGG – – – 3′The cleavage sites for the restriction enzymes EcoRI and PstI are shown below.Write the sequence of both strands of the DNA fragment created when this DNA is cleaved with both EcoRI and PstI. The top strand of your duplex DNA fragment should be derived from the strand sequence given above
The restriction endonuclease NciI recognizes and cuts the five-base-pair sequence 5’- CC(G/C)GG-3’ [where (G/C) means either G or C will work at that position]. (1) How often, on average, would this sequence occur in random DNA? Assume the DNA contains 25% each of A, G, T & C. (2) After digestion, Nci1 leaves a one-base 5’ overhang. Write/draw the cut site/digested products.
The restriction endonuclease NotI recognizes the octanucleotide sequence GCGGCCGC. Calculate the expected number of NotI cleavage sites in the bacteriophage l genome, a linear DNA duplex 48.5 kbp in length with a (G + C) content of 50%.
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