Genetics: From Genes to Genomes
6th Edition
ISBN: 9781259700903
Author: Leland Hartwell Dr., Michael L. Goldberg Professor Dr., Janice Fischer, Leroy Hood Dr.
Publisher: McGraw-Hill Education
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Chapter 4, Problem 42P
In the Fast Forward Box Visualizing X Chromosome Inactivation in Transgenic Mice, suppose the investigators had looked at the expression of green and red fluorescent protein in early mouse embryos, when the embryos have fewer than 500 cells. What patterns would they likely have observed? (Assume that the transgenes make gene product this early in development.)
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In the Fast Forward Box Visualizing X ChromosomeInactivation in Transgenic Mice, suppose the investigators had looked at the expression of green and red fluorescent protein in early mouse embryos, when theembryos have fewer than 500 cells. What patterns wouldthey likely have observed? (Assume that the transgenesmake gene product this early in development.)
In the module, you have learned about P-element mediated transgenesis in Drosophila and the concept of using transgenes to rescue mutant phenotypes. In the figure below, you will see a wild type fly with its natural eye colour and three mutants with their eye colours changed to vermillion, white and rosy, respectively. A schematic of P-element mediated transgenesis (as shown in the lectures) is also included in the figure. Please inspect the schematic carefully and choose which of the following statements is true:
I.
Injection of the white experimental transgene into the vermillion mutant embryo will not change the vermillion mutant phenotype
II.
Injection of the white experimental transgene in the rosy mutant embryo will change rosy eye colour to red (wild type)
III.
Injection of the white experimental transgene in the white mutant embryo will not change the white mutant phenotype
IV.
Injection of the white experimental transgene in the rosy mutant…
Dosage compensation is critical for organisms with sex chromosomes to equilibrate gene expression. The role of long non-coding RNAs has been shown to play an important role in affecting the decision to carry out X chromosome inactivation during dosage compensation in mammals.
Q9a) How can a long non-coding RNA affect the decision to keep an X-chromosome active in female mammals?
Q9b) How can a long non-coding RNA initiate the steps to silence the chromosome to be inactivated?
Q9c) Explain which long non-coding RNA is responsible for the various steps to silence the inactive X and describe how its function leads to changes in the chromatin that are incompatible with active transcription off the inactive X
Chapter 4 Solutions
Genetics: From Genes to Genomes
Ch. 4 - Choose the best matching phrase in the right...Ch. 4 - Humans have 46 chromosomes in each somatic cell....Ch. 4 - The figure that follows shows the metaphase...Ch. 4 - Human XX males who are sex-reversed because they...Ch. 4 - Researchers discovered recently that the sole...Ch. 4 - One oak tree cell with 14 chromosomes undergoes...Ch. 4 - Indicate which of the cells numbered iv matches...Ch. 4 - a. What are the four major stages of the cell...Ch. 4 - Answer the questions that follow for each stage of...Ch. 4 - Can you think of anything that would prevent...
Ch. 4 - One oak tree cell with 14 chromosomes undergoes...Ch. 4 - Which types of cell division mitosis, meiosis I,...Ch. 4 - Complete the following statements using as many of...Ch. 4 - The five cells shown in figure a e are all from...Ch. 4 - One of the first microscopic observations of...Ch. 4 - A person is simultaneously heterozygous for two...Ch. 4 - Assuming i that the two chromosomes in every...Ch. 4 - In the moss Polytrichum commune, the haploid...Ch. 4 - Can you think of anything that would prevent...Ch. 4 - Sister chromatids are held together through...Ch. 4 - The pseudoautosomal regions PARs of the X and Y...Ch. 4 - Remarkably, the platypus has 10 sex chromosomes,...Ch. 4 - Somatic cells of chimpanzees contain 48...Ch. 4 - In humans: a. How many sperm develop from 100...Ch. 4 - Women sometimes develop benign tumors called...Ch. 4 - In a certain strain of turkeys, unfertilized eggs...Ch. 4 - Imagine you have two pure-breeding lines of...Ch. 4 - A system of sex determination known as...Ch. 4 - In Drosophila, the autosomal recessive brown eye...Ch. 4 - Barred feather pattern is a Z-linked dominant...Ch. 4 - When Calvin Bridges observed a large number of...Ch. 4 - In a vial of Drosophila, a research student...Ch. 4 - In 1919, Calvin Bridges began studying an X-linked...Ch. 4 - In Drosophila, a cross was made between a...Ch. 4 - As we learned in this chapter, the white mutation...Ch. 4 - The following is a pedigree of a family in which a...Ch. 4 - Each of the four pedigrees that follow represents...Ch. 4 - The pedigree that follows indicates the occurrence...Ch. 4 - Duchenne muscular dystrophy DMD is caused by a...Ch. 4 - The X-linked gene responsible for DMD encodes a...Ch. 4 - Males have hemophilia when they are hemizygous for...Ch. 4 - In the Fast Forward Box Visualizing X Chromosome...Ch. 4 - Consider the following pedigrees from human...Ch. 4 - Several different antigens can be detected in...Ch. 4 - The ancestry of a white female tiger bred in a...Ch. 4 - The pedigree that follows shows the inheritance of...Ch. 4 - In 1995, doctors reported a Chinese family in...Ch. 4 - In cats, the dominant O allele of the X-linked...Ch. 4 - In marsupials like the opposum or kangaroo, X...Ch. 4 - The pedigree diagram below shows a family in which...
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- Using a transgenic technique, propose an experiment to determine whether Cdx2 is sufficient for trophoblast development in the mouse embryo. Describe two results that you would expect to observe at the blastocyst stage if Cdx2 is indeed sufficient for trophoblast development. Be as specific as possible regarding the transgene that you propose for this experiment (including what gene's enhancer you would use in the transgene). Note: you do not need to explain the details of how a transgenic mouse is made. Describe the experiment in steps (Step 1: ..., Step 2: ... etc) and please keep your answer to under 150 words. tips: DONT talk about stop cassetes/memory cassetes, focus on transgenes Paper called "Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst" gave lots of results that you might see,, 6 diff ways that cdx2 is required for trophoblasts need specific gene enhancer (dont just say "expressed enhancer in genital…arrow_forwardThe length of dogs’ legs varies widely across species, with the Nova Scotia duck tolling retriever representing a short-legged breed. Genome-wide association studies (GWAS) linked this phenotype to a locus on Canine familiaris (CFA) chromosome 12 with strong similarity to the FGF4 gene on chromosome 18. Further work demonstrated that both loci are transcribed. Note: CpG islands (green in diagram) often mark active promoters; we will discuss in a later lecture. Based on the diagram below, what do you think is the relationship between these two loci? The genome sequence shows another locus on chromosome 10 that is almost identical to the one depicted above on chromosome 12, from 5’UTR through 3’UTR. The gene does have one polymorphism, though, in exon 2, that distinguishes it from the Chr. 12 gene. You have developed an assay to easily distinguish mRNA derived these two variants. However, when you assay the Chr. 10-derived mRNA, you don’t detect anything at all.…arrow_forwardExpression of recombinant proteins in yeast is an important tool for biotechnology companies that produce new drugs for human use. In an attempt to get a new gene X expressed in yeast, a researcher has integrated gene X into the yeast genome near a telomere. Will this strategy result in good expression of gene X? Why or why not? please try to explain a bit elaborately.arrow_forward
- Expression of recombinant proteins in yeast is an important tool for biotechnology companies that produce new drugs for human use. In an attempt to get a new gene X expressed in yeast, a researcher has integrated gene X into the yeast genome near a telomere. Will this strategy result in good expression of gene X? Why or why not? Would the outcome of this experiment differ if the experiment had been performed in a yeast line containing mutations in the H3 or H4 histone tails?arrow_forwardexpression of recombinant proteins in yeast is an important tool for biotechnology companies that produce new drugs for human use.in an attempt to get a new gene X expressed in yeast, a researcher has integrated gene X into the yeast genome near a telomere. will this strategy result in good expression of gene X? why or why not?arrow_forwardYou are working with a fly hair cell developmental system. This Notch/Delta-regulated system results in clusters of cells where the central one differentiates into a specialized hair cell. To better understand this system you have tagged the C-terminal cytoplasmic domain of Notch with GFP. You have done a forward genetic screen to look for mutants that have unusual phenotypes in this Notch system. The first one is a mutation in Notch itself. This mutant is in the ADAM10 cleavage site and blocks proteolysis. Draw the expected outcome for such a mutant: GFP localization and developmental outcome 24hr after differentiation. WT before differentiation WT 24 hours after differentiationarrow_forward
- Drosophila females homozygous for loss-of-functionmutations in the gene aubergine are sterile. RNA-Seqexperiments show that in the ovaries of these females,the levels of RNAs for many kinds of transposable elements are more than 10× higher than in wild-type ovaries. The aubergine gene encodes a Piwi-family protein.a. Why do you think these females are sterile?b. Piwi proteins interact with piRNAs that are transcribed from piRNA gene clusters. Given that thelevels of many kinds of TEs are elevated in mutantovaries, what kinds of DNA sequences do youthink are located in these clusters?c. Many investigators think of piRNAs as a kind ofdefensive mechanism that protects organisms fromthe effects of new transposable elements that mightbe introduced into genomes, for example fromother species. Explainarrow_forwardExplain one experimental strategy for determining the functional role of the mouse HoxD-3 gene.arrow_forwardExplain about how X chromosome inactivation takes place in mammals at the chromosomal and molecular level. B. What genes are involved in inactivating a human X chromosome? . C. What role does X chromosome-specific inactivating transcript --XIST-- non coding RNA play in the inactivation of the human X chromosome.arrow_forward
- The GAL4 expression system can be used to experimentally induce expression of a gene in a specific tissue at a specific time. You want to study the overexpression of Your Favorite Gene (YFG) in mouse ear development. However, if you overexpress this gene everywhere, the mouse is not viable past early embryo development. You have the following mouse lines with different mutations or transgenic constructs available. Which two will you cross together to answer your research questions? GAL4 with constitutive enhancer GAL4 with embryo enhancer GAL4 with ear enhancer yfg loss-of-function line YFG CDNA with UASG promoter YFG CDNA with constitutive promoterarrow_forwardConcerning the Tools of Genetics Box Analysis ofCell-Cycle Mutants in Yeast:a. Describe how you would use replica plating ofmutagenized, haploid yeast cells to identifytemperature-sensitive (ts) mutations in essentialgenes needed for yeast growth and survival.b. Among the many ts mutations you found in part(a), how would you distinguish mutations in genesneeded for cell-cycle progression from those ingenes needed for other aspects of the life of yeasts?c. If you had a large collection of yeast cell-cyclemutants, how would you determine which of themutations are in the same gene and which are indifferent genes?arrow_forwardIn humans, dosage compensation is accomplished by: inactivating one X chromosome in female somatic cells inactivating one homolog from each homologous pair of chromosomes in female somatic cells inactivating the Y chromosome in male somatic cells increasing gene expression from the X chromosome in male somatic cellarrow_forward
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