Concept explainers
. One way to determine where inside a cell a protein
(protein X) normally localizes is to generate a reporter
gene construct containing: (i) the gene X regulatory
region and coding sequences, and (ii) coding sequences
for GFP fused in frame to the 3′ end of the gene X
coding sequences just before the stop codon. A mouse
containing such a transgene will express a hybrid protein X-GFP only in those cells in which gene X is normally expressed.
a. The gene X-GFP fusion gene described could be
generated by knocking in GFP coding sequences
instead of by random insertion of a transgene.
Diagram the knockin construct you could use for
this purpose.
b. What might the advantage be of the knockin strategy versus the transgene strategy?
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- Three similar proteins are expressed in human tissues: HHT1 is expressed in the liver, HHT2 is expressed in the pancreas, and HHT3 is expressed in the heart. You are given the task of investigating how these 3 similar proteins are produced. After investigation, you conclude that: all answers are correct it is possible that HHT1 and 3 are produced via alternative splicing, and HHT2 is encoded by a different gene it is possible that all 3 proteins are encoded by the same gene and produced via alternative splicing it is possible that each of these proteins are encoded by different genes (3 different genes)arrow_forwardKnock out mice that are mutant for a gene product X die. Variants of the X gene that were reintroduced through homologous recombination indicate that variant proteins that lack the C-terminal region of the protein cannot rescue the lethality (did not allow them to live), and always localized to the cytoplasm. Those that retained the C-terminal region rescued the lethality (conferred viability!) and were consistently localized within the nucleus. RNA-seq analysis of the mutant cells vs the wild-type cells indicated that the expression of many genes that are essential for neural function was reduced in the knock-out mutant cells. The N-terminal region of Protein X is 100% conserved between mouse and humans at both the amino acid and the nucleotide level. The predicted mouse mRNA sequence is shown below where the AUG corresponds to the translational start site (AUG). 5’-AUGUUUACAGAGGGGAAU... -3’ d) What motif could be present to direct this protein to its correct destination? e)…arrow_forward24arrow_forward
- Pls help ASAParrow_forward1.Your goal is to design a strategy to create thisfinal pDHFR plasmid for fusion protein expressionfrom the materials available:You have an empty pET21a expression vector and another vectorthat contains the fusion protein nucleotide sequence (pBluescript + GST-DHFR-His). (#) indicatesbp location ofenzyme cut: a.EcoRIonly, HindIII only, NotIonly, EcoRI and HindIII, EcoRI and NotI, or HindIII and NotI? b.Briefly explain the rationale for your selection. Please connect your rationale to the need for compatible ends without any further manipulation and required directionality of the DHFR fusion protein coding sequence relative to the T7 promoter that will drive its expression. c.What is the final size(kb)of your desired pDHFR plasmid ligation product based onyour design? d. Complete the chart providedto indicate thesize of all fragments(in bp)resultingfrom complete digestion of each plasmid givenyour strategy, andthe fragment(in kb)from each you would isolate for ligation.Please mind…arrow_forwardSelect all the examples of mutations that are likely to have a global effect on gene expressioarrow_forward
- . All mutations that abolish function of the Rho termination protein in E. coli are conditional mutations;no cells with null mutations of the Rho-encoding genehave ever been isolated. What does this tell you aboutthe rho gene and its product?arrow_forwardGTTTTCACTGGCGAGCGTCATCTTCCTACT 8. What is the function (e.g. transcriptional regulation, transmembrane signaling, kinase, protease, etc.) of the protein(s) encoded by the gene.arrow_forwardAnother mutant for of the Lac promoter demonstrates the characteristics below compared to the wild-type promoter. The RNA Polymerase Holoenzyme binds tighter to the mutant promoter, but has reduced promoter activity in an assay with the promoter fuse to the gene for Green Fluorescent Protein (GFP). Provide a plausible explanation for this data. Lac Promoter Activity punog Binding of RNA Pol Holoenzymes to Promoters 120 100 80 60 40 20 0 0 20 40 Lac Promoter X 60 [DNA] nM 80 100 120 GFP Fluorecence 100 90 80 70 60 50 40 30 20 10 0 Lac Promoter Xarrow_forward
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