Q2 (a) In 2014, during their iGEM project on biodesalination, students were willing to modify bacteria so that instead of swimming they would float. To do this, they chose to first knock-out one of the genes for motility (such as MotA) and then insert a gene sequence to make gas bubbles. They used the restriction enzyme Pstl, which recognizes the sequence 5'-CTGCAG-3' and cuts between A-G. (CTGCA/G). Using the from one of the DNA strands of the gene below, sequence 5'-TTGATTTTATCGCTGCAGTCGATTATCTGCGCCTGATTATCACTGCAGGCG-3' (fragment modified from the students' plasmid) (v) Provide the double strand sequences resulting from the action of Pstl. (vi) Specify the name of the ends of the sequences generated and explain their functionality. (vii) Describe the last step required to complete the process of deletion started using Pstl (viii) Provide the number of amino-acids deleted through this process and explain why such a small deletion could be sufficient to inactivate motility.

Human Anatomy & Physiology (11th Edition)
11th Edition
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Chapter1: The Human Body: An Orientation
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Problem 1RQ: The correct sequence of levels forming the structural hierarchy is A. (a) organ, organ system,...
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Q2
(a)
In 2014, during their iGEM project on biodesalination, students were willing to modify
bacteria so that instead of swimming they would float. To do this, they chose to first
knock-out one of the genes for motility (such as MotA) and then insert a gene sequence
to make gas bubbles. They used the restriction enzyme Pstl, which recognizes the
sequence 5'-CTGCAG-3' and cuts between A-G. (CTGCA/G). Using the sequence
from one of the DNA strands of the gene below,
5'-TTGATTTTATCGCTGCAGTCGATTATCTGCGCCTGATTATCACTGCAGGCG-3'
(fragment modified from the students' plasmid)
(v) Provide the double strand sequences resulting from the action of Pstl.
(b)
(vi)
(vii)
Specify the name of the ends of the sequences generated and explain their
functionality.
Describe the last step required to complete the process of deletion started using
Pstl
(viii) Provide the number of amino-acids deleted through this process and explain
why such a small deletion could be sufficient to inactivate motility.
The team would now like to establish the smallest possible deletion that would
inactivate the function of the protein. Describe a strategy to carry out this experiment.
To check their sequences, the team choses to carry out DNA sequencing themselves,
using the Sanger method. Describe the biochemical processes involved in this
technique in detail.
Transcribed Image Text:Q2 (a) In 2014, during their iGEM project on biodesalination, students were willing to modify bacteria so that instead of swimming they would float. To do this, they chose to first knock-out one of the genes for motility (such as MotA) and then insert a gene sequence to make gas bubbles. They used the restriction enzyme Pstl, which recognizes the sequence 5'-CTGCAG-3' and cuts between A-G. (CTGCA/G). Using the sequence from one of the DNA strands of the gene below, 5'-TTGATTTTATCGCTGCAGTCGATTATCTGCGCCTGATTATCACTGCAGGCG-3' (fragment modified from the students' plasmid) (v) Provide the double strand sequences resulting from the action of Pstl. (b) (vi) (vii) Specify the name of the ends of the sequences generated and explain their functionality. Describe the last step required to complete the process of deletion started using Pstl (viii) Provide the number of amino-acids deleted through this process and explain why such a small deletion could be sufficient to inactivate motility. The team would now like to establish the smallest possible deletion that would inactivate the function of the protein. Describe a strategy to carry out this experiment. To check their sequences, the team choses to carry out DNA sequencing themselves, using the Sanger method. Describe the biochemical processes involved in this technique in detail.
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