Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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- Select all answers that applyarrow_forwardPlease answer all parts with explanations. This is biochemistryarrow_forwardThe aromatic side chain of Trp residues in proteins and peptides can be chemically modified by two photochemical reactions using ultraviolet light (hv) at 20°C (Figure 1). hv CCI3CO₂H (10 mm), Buffer A (pH 8.0) O HO HN HN- O A. Acidic NH ww O B. Basic O c. Hydrophobic O D. Polar neutral OB. Indole NH ww Figure 1 Photochemical reactions of Trp side chain with CHCl3 and CCI₂CO₂H O A. Imidazole Each substitution on Trp replaces one hydrogen atom attached to a carbon somewhere on the indole ring. Photochemical modification percentages of various Trp residues in carbonic anhydrase at 20°C are shown in Table 1. Table 1 Photochemically Modified in Carbonic Anhydrase Reactant Buffer W4 W15 W96 W122 W190 W207 W243 51% 0% 44% A 37% 0% 0% CHCI 3 0% CHCI₂ B 0% 0% 0% 0% 0% 0% 55% CCI,CO₂H A 72% 66% 0% 100% 100% 0% 75% O c. Pyrimidine OD. Pyrrole hv W15 and W96, which are in the interior of carbonic anhydrase, are 21% and 29% modified respectively by 10 mM CHCl3 in Buffer A at 75°C, a temperature…arrow_forward
- 6. A control phospholipid membrane is isolated in which the phospholipid tails all have an 18-C chain length and are comprised of a 50:50 mixture of saturated and unsaturated tails. In addition, about 25% of the lipids are fluorescently labeled on the head groups. a) Draw a single plot of Fluidity vs. Temperature that contains the expected curves for: Control phospholipid (line- -) Control supplemented with 18-C saturated phospholipids (dashed line - Control supplemented with 16-C chain length (dotted line • • • • • • ) b) Draw a single plot of the Fluorescence Intensity vs. Time that contains the expected curves of a Fluorescence Recovery After Photobleaching (FRAP) using the same samples as in (a) above. The FRAP experiment is conducted at the same temperature for each sample (which is the Tm of the of the control phospholipid).arrow_forward6. b. Draw a box around the disulfide bridge in oxytocin, if present, or write "none". 7. Mark each peptide bond in oxytocin by making the corresponding line in the structure thicker or marking it with a different color. The first one is shown for you as an example (in dark orange). 8. Number the central carbon of each amino acid in oxytocin by pointing a small arrow to it or by circling the corresponding vertex in the image. Numbers 1 and 2 indicate the central carbons of the first and second amino acids of oxytocin, and are shown for you as an example. 9. Fill out the following table, listing amino acids that make up oxytocin in order, from the N terminus to the C terminus, characterizing each amino acid by the properties of its R group (side chains), and briefly indicating the reasoning for the characterization. You may consult amino acid groupings by category in the slides (or the textbook, p.49), but you must explain the reasoning for each in your own words. CO 1 AA# Abbre- Full…arrow_forwardCompare the stability of the two salt bridges shown circled in blue at pH 8.4. The carboxylate ions are completely de- protonated at pH 8.4 The pka of the amino group (upper left) is 8.1 and the pka of the amino group (bottom right) is 8.7. (d) NH, F-8- Ed (b) O-H- M5 CH₂COOH (c) 5 (b) CH, CH. H--O=C (d) -H H CH,OH (b) KCHJ NH, (a) The bottom right salt bridge is stronger due to the partial positive charge of +2/3. The bottom right salt bridge is stronger due to the partial positive charge of +1/3. The upper left salt bridge is stronger due to the partial positive charge of +1/3. The upper left salt bridge is stronger due to the partial positive charge of +2/3.arrow_forward
- ok-Personal Microsoft Edge com/maildeeplink 021 pdt Download Print Save to OneDrive 1. Draw the structure of the pentapeptide Gln-Trp-His-Glu-Tyr that would predominate in aqueous solution at pH3D10.3. (Relevant pka values are: 2.2 4.3, 6.0, 9.8, and 10.1) Acp is adiusted toarrow_forwardB, C, D, and E pleasearrow_forwardpls answer the following questionarrow_forward
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