Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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- Our PCR samples already contain loading dye, but sometimes this isn’t the case. If your samples didn’t already contain dye and you wanted to load your PCR sample onto an agarose gel, you’d need to add loading dye to the proper concentration. There is a 6X loading dye available for use; how many µl of this loading dye will you add to 10 µl of your sample so that it is at a 1X working concentration? Show your work.arrow_forwardWhat is the sequence of the sample DNA submitted for sequencing given the gel electrophoresis profile from the Sanger sequencing method? ddATP ddCTP ddGTP ddTTParrow_forwardYou have run a gel with 5 uL of amplified DNA in addition to 1 uL of 6X loading dye. Comparing the brightness of this band to your marker, you estimated that your amplified DNA is approximately 62 ng. What was the concentration of your amplified DNA that was loaded? You do not need to account for the volume of loading dye in your calculations.arrow_forward
- Draw your own PCR diagram to show the role of each component and relevance of each temperature shift during the PCR reaction. What’s happening at each of those temperatures and why is it important it changes?arrow_forwardThe sequence 5' GCCTAATGCGTTCATAATGGCGTTTGCCACGGACGTAAAGTCGT 3' represents 50% of a PCR product which is cloned into a 1.5 kb plasmid for bacterial expression. What would the agarose gel look like, including a lane for markers, and where would the following pieces of DNA run: 1. the PCR insert 2. the empty uncut plasmid 3. the empty plasmid cut with a single restriction enzyme 4. the cloned plasmid containing the insertarrow_forwardUsing the designed forward and reverse primer from Question 23-30, you performed PCR to amplify the CO1 gene of S. tawilis. Then, you verified the PCR product using the Agarose Gel Electrophoresis. Here is the result of the AGE. M-Marker L1-PCR Product ML1 You noticed that there are many bands in your PCR product. What does this indicate? Choose the best answer. The primers were not specific to CO1 gene. The annealing temperature is too high. The templated DNA is not enough. There is a formation of primer dimers. The primer length is too short. The melting temperature is too high.arrow_forward
- please solve this with step-by-step calculations and explanations.arrow_forwardAll things considered, the most important factor with respect to successful PCR is Multiple Choice primer design annealing temperature extension time quantity of templatearrow_forwardWhat are the reasons why there needs to be more than 10 cycles in the PCR process? Name 2 reasons.arrow_forward
- What are the components require in a PCR reaction? And justify them? Please answer at your own words.arrow_forwardAfter plasmid isolation, you take 0.5 uL of the sample and mix it with 1 uL of TE buffer. The absorbance of this sample at 260 nm is 0.8 and the average extinction coefficient of double-stranded DNA at 260 nm is 0.020 (μg/ml)−1 cm−1. What is the concentration of the undiluted sample? 120 μg/mL 80 μg/mL 40 μg/mL 12 μg/mLarrow_forwardYou are studying a genome that has 42% G:C content and the remaining 58% of the genome is As and Ts. Assuming a random distribution of these bases what is the expected distance (ie there will be a cut once in every XX base pairs) between cut-sites for restriction enzyme that cuts at the sequence GAATTC? 256 3207 4168 4096arrow_forward
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