Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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- Consider the protein below: HO HỘ NH CH-OH CH Identify/Name the noncovalent interaction between groups in the following locations: Σarrow_forwardWhat is the charge on the following peptide at standard biochemical pH? S-Y-D-F-K-I-V-F-L-L +2 -1 0 0 0-2 O +1arrow_forwardPlease draw titration curves for peptide HFDTYA and HEKDGQ, and calculate the pl for each. Usethis information to explain why the peptide HFDTYA has low solubility and HEKDGQ has a highersolubility in bulk water at pH = 7.arrow_forward
- An engineered ligand binds its target with 5 nM affinity at high pH. However, protonation of a histidine residue in the binding site of the ligand renders it unable to bind. Plot the ligand:target complex concentration versus the initial ligand concentration (in protonated or unprotonated form) at pH 4, 5, 6, 7, or 8 (five lines on one plot). Use a total target concentration of 10 nM.arrow_forwardthe overall, net ionic charge on this peptide at pH = 7 would be: Cys - Ala - Glu-Arg - Met - Serarrow_forwardA protein has a dissociation equilibrium constant equal to 4.0um. What is the concentration of free ligand when the fraction of bound sites is 0.7arrow_forward
- A HEPTAPEPTIDE that punctures the bacterial cell wall has just been recently isolated from the venom gland of a frog. Amino acid analysis of the peptide reveals the following information below: (NOTE: when the sequence is not known, a comma separates the amino acids) Hydrezine Acid Hydrolysis (6 N HC) at 10 C Heptapeptide (2) Arg. Pro, Phe, Tyr, Ala, Lys 2,4 dinitrafluerobenzene DNP-Phe Lys and modified free amino acids Peptide 1 (Ala, Lys) Cleovage with Trypsin, then chrometogrophy Peptide 2 (Pro, Arg, Tyr) Peptide 3 (Phe, Arg) Phe Peptide 4 (Arg. Tyr) Clevege with Chymetrypsin, then cromategrphy Peptide 5 (Lys, Pro, Ala, Arg)arrow_forwardPlease draw the structure of the amino acid Histidine at each ionization state and please also give their net charges.arrow_forwardcalculate the net charge of your peptide at I) pH 2.0; ii) pH 6.0 iii) pH 7.0; iv) pH 11.5. show full working and include justification as to how you determined the charge of WEIJIN peptidearrow_forward
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