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Question 7.
A: Key Changes to Glycolysis Due to the New Enzyme:
The new enzyme catalyzes the conversion of glyceraldehyde-3-phosphate to 3-phosphoglycerate by the addition of molecular hydrogen (H₂). This event is a novel shortcut in the glycolytic pathway, bypassing several steps. The specific changes include:
* Bypassing Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH):
- Glyceraldehyde-3-phosphate is directly converted to 3-phosphoglycerate without undergoing the traditional GAPDH-catalyzed reaction, which involves the generation of NADH.
*Avoiding Generation of NADH:
- The conventional glycolytic pathway involves the generation of NADH during the GAPDH-catalyzed step. By bypassing this step, the new pathway does not produce NADH directly in this reaction.
* Eliminating the Need for Phosphoglycerate Kinase (PGK) and Phosphoglycerate Mutase (PGM):
- Phosphoglycerate is directly formed without the need for PGK and PGM, which are enzymes involved in the conversion of 1,3-bisphosphoglycerate to 3-phosphoglycerate in the canonical glycolytic pathway.
B: Benefits of Shortening the Glycolytic Pathway:
*Energy Efficiency:
- The new pathway may be more energy-efficient since it avoids the production of NADH. While NADH is an important molecule for oxidative phosphorylation and ATP generation, the direct conversion of glyceraldehyde-3-phosphate to 3-phosphoglycerate without NADH production might be advantageous under specific cellular conditions.
*Reduced Complexity and Resource Utilization:
- Shortening the glycolytic pathway eliminates the need for certain enzymes (e.g., GAPDH, PGK, PGM) and associated cofactors, simplifying the biochemical processes in the cell. This event could result in resource savings and reduce the
*Rerouting Metabolites for Anabolic Processes:
- The shortcut may enable the rerouting of glycolytic intermediates for anabolic processes. By bypassing certain steps, the cell could channel metabolites toward biosynthetic pathways, supporting the synthesis of macromolecules required for growth and proliferation.
*Adaptation to Specific Environmental Conditions:
- The presence of this mutant yeast might confer a selective advantage in certain environmental conditions where a shorter glycolytic pathway is more beneficial. This adoption could enhance the yeast's fitness in specific niches.
*Regulation of Redox Balance:
- The absence of NADH production in the glycolytic pathway might impact the cellular redox balance. The cell may need compensatory mechanisms to maintain the necessary balance of oxidized and reduced cofactors in other metabolic pathways.
This is the question: There is an experimental biochemist who has just discovered a mutant yeast whose glycolytic pathway was shorter because of the presence of a new enzyme that catalyzes the following reaction:
glyceraldehydes-3-phosphate + H2 ----------> 3-phosphoglycerate The research questions are
a) What are the key changes to glycolysis does this new pathway cause
b) Whether shortening the glycolytic pathway in this way benefits the cell
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