Biochemistry
Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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c) In the chanism of alcohol dehydrogenase reducing acetaldehyde to ethanol, NADH
donates a hydride to the carbonyl C, and the oxyanion is transiently stabilized by the Zn2+
divalent cation (see figure on first page), which is then protonated to form the final product.
If one assumes that 4-iodopyrazole was bound similarly to the substrate, then which atoms
of the inhibitor would be equivalent to the atoms of acetaldehyde? Mark the figure below
with the atom of 4-iodopyrazole equivalent to each of the 3 heavy atoms in acetaldehyde.
(Use the atom identifiers to identify each one unambiguously: N1, N2, C3, C4, C5, 14.)
carbonyl C
HC
carbonyl O
CH3
methyl C
Based on this, do you see any residue likely to serve as a proton donor to the oxygen
of the ethanol alkoxide intermediate (CH3-CH2-O') in the last step of the
mechanism?
If so, which residue is it?
Choose the correct ending for each statement, as best you can:
The binding site for NAD*/NADH is
shared between 2 domains of ADH.
almost exclusive in one domain of ADH.
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Transcribed Image Text:c) In the chanism of alcohol dehydrogenase reducing acetaldehyde to ethanol, NADH donates a hydride to the carbonyl C, and the oxyanion is transiently stabilized by the Zn2+ divalent cation (see figure on first page), which is then protonated to form the final product. If one assumes that 4-iodopyrazole was bound similarly to the substrate, then which atoms of the inhibitor would be equivalent to the atoms of acetaldehyde? Mark the figure below with the atom of 4-iodopyrazole equivalent to each of the 3 heavy atoms in acetaldehyde. (Use the atom identifiers to identify each one unambiguously: N1, N2, C3, C4, C5, 14.) carbonyl C HC carbonyl O CH3 methyl C Based on this, do you see any residue likely to serve as a proton donor to the oxygen of the ethanol alkoxide intermediate (CH3-CH2-O') in the last step of the mechanism? If so, which residue is it? Choose the correct ending for each statement, as best you can: The binding site for NAD*/NADH is shared between 2 domains of ADH. almost exclusive in one domain of ADH.
shared between 2 domains of ADH.
almost exclusive in one domain of ADH.
The active site of ADH (where the chemistry takes place) is
shared between 2 domains of ADH.
almost exclusive in one domain of ADH.
expand button
Transcribed Image Text:shared between 2 domains of ADH. almost exclusive in one domain of ADH. The active site of ADH (where the chemistry takes place) is shared between 2 domains of ADH. almost exclusive in one domain of ADH.
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