QUANTITATIVE Imagine repeating the experiment on epigenetic inheritance that is shown in Figure 19.6. You measure the amount of radioactive uridine (U) incorporated into Hnf4a mRNA in counts per minute (cpm) to determine the level of Hnf4a gene transcription in rats born to mothers fed either a normal diet or a low-protein diet. The results are 11,478 cpm for the normal diet and 7368 cpm for the low-protein diet. You should prepare a graph similar to the one at the bottom of Figure 19.6 that shows the normalized results for the low-protein diet relative to the normal diet. Normalizing values means that the value obtained from one condition is expressed as 1.0 (the norm; the normal diet in this case) and the values obtained from any other conditions (low-protein diet in this case) are expressed as decimal values relative to the norm.
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Chapter 19 Solutions
Biological Science (7th Edition)
- https://ny.pbslearningmedia.org/resource/biot09.sci.life.gen.epigenetics/epigenetics/ In what way do the brown and yellow mice shown in the video differ?Why is this so?arrow_forwardAurora AAurora A is a protein that acts as a kinase (transfers phosphates to molecules). Many types of cancer cells, including breast cancer cells, have higher than normal levels of this protein.Expressions of Aurora A genes in normal breast tissues (n = 10), normal tissues adjacent to tumors (n = 12) and breast tumors (n = 14).Scientists studying the production of Aurora A protein in normal frog cells observed that the amount of this protein in the cells changed throughout the cell cycle.Scientists tested chemicals that block Aurora 2 to see if they could be used as anti-cancer drugs. They found that some of the candidate drugs did slow the growth of cancer cells in cell culture in the lab. But when they tested these drugs in cancer patients to see if the drugs could slow the growth of solid tumors, they found that the benefit to patients was small when compared to the development of severe side effects such as anemia (low red blood cell count) and leukopenia (low white blood cell…arrow_forwardThe following diagram is from a paper investigating the role of β4 integrin in breast cancer. They examined the expression of miRNAs (rows) in ten β4 positive and ten β4 negative breast cancers. Each array was performed in triplicate (columns) (Gerson, 2012). A. Describe how you think this array was carried out. B. β4 integrin is normally involved in attaching epithelial cells to the extracellular matrix and holding them in place, but in cancer, it can be involved in attaching cells to actin and increasing motility as well as in cell signaling. How is β-integrin expression related to miRNA expression? What do you think this means for these breast cancers?arrow_forward
- Discuss the method and experiments where Simplifying Protein Expression with myTXTL is usedarrow_forwardBased on the information from studies of the long-term effects of diet on metabolism in mice, what might the epigenetic effects be on the children and grandchildren of people who were exposed to famine as children? Include in your answer the types of epigenetic changes in chromatin that you might expect to see and the phenotypic effects on lipid and cholesterol metabolismarrow_forwardA researcher studying epigenetic changes induced by exercise had participants pedal a stationary bicycle with only one leg for 45 minutes a day, 4 times a week for 3 months. They then took muscle biopsies from both legs (the one that exercised and the one that did not) and compared DNA to look for epigenetic changes induced by exercise. They found over 5,000 sites on the genome where methylation patterns differed between the DNA isolated from the exercised leg and DNA isolated from the non-exercised leg. A. How would you predict these changes would affect transcription and translation? Is there other information you need to know to feel confident in your prediction? B. Would these changes be passed down to the participants' offspring? Why or why not? C. Why did all participants exercise only one leg rather than having two groups- one who exercised and one who did not?arrow_forward
- . Let’s say that you have incredible skill and can isolate the white and red patches of tissue from the Drosophila eyes shown in Figure 12-24 in order to isolate mRNA from each tissue preparation. Using your knowledge of DNA techniques from Chapter 10, design an experiment that would allow you to determine whether RNA is transcribed from the white gene in the red tissue or the whitetissue or both. If you need it, you have access to radioactive white-gene DNAarrow_forwardExplain one experimental strategy for determining the functional role of the mouse HoxD-3 gene.arrow_forwardStudies on monkeys have provided insight on the role of maternal care on the epigenome. Imagine you have 3 groups of monkeys. Group A: Monkeys raised by their biological mother. Group B: Monkeys raised by other monkeys that are not their biological mother. Group C: Monkeys raised by a human surrogate nurse. You then study the behavioural and epigenetic patterns of these monkeys. Which of the findings would be plausible from this study? A. Monkeys from group A will most likely become alcoholics. B. Monkeys from group B will be equally anxious compared to group C since neither were raised by their biological mother. C. Monkeys from group C will have a significantly different epigenomic pattern compared to group A. D. Groups A, B and C will have similar epigenomic patterns.arrow_forward
- You have been analyzing wing development mutants in Drosophila and have collected the genetic/Western data below. Your epistasis analysis (not shown), suggested your current model that DW-2 is upstream of WL-1. What is a plausible mechanism for how DW-2 regulates WL-1? mutant name wingless-1 doublewing-2 Prated with Ants-Wingless MW standards || | | mutanttype ODW-2 inhibits transcription of WL-1 O DW-2 polyubiquitinates WL-1 null null phenotype Model Ac O DW-2 phosphorylates WL-1 and prevents it from entering the nucleus O DW-2 cleaves WL-1 proteolytically Wings Mode of regulation DW-2 Wings Wingsarrow_forwardthis is what i have said about this image so far, what else can be said aswell including the raw count column. " Interpreting the results of an RNA-Seq analysis is pivotal in understanding the underlying genetic mechanisms of diseases such as breast cancer. In this analysis, Figure 1 provides comprehensive data on differentially expressed genes associated with breast cancer. By delving into the provided information, we can gain valuable insights into the molecular landscape of this disease. First focus is on the gene with the highest fold change, EYA4, situated on chromosome 6. With a staggering fold change of 3604.4176, EYA4 exhibits an unprecedented level of overexpression in cancerous cells compared to normal cells. This profound alteration suggests a pivotal role for EYA4 in breast cancer pathogenesis. The log2 fold change of 11.81555 further emphasizes the magnitude of this difference in gene expression. Statistical significance is evident, with an exceptionally low p-value of…arrow_forwardCan you please help me by drawing a serie of schematic figures that demonstrates the information in the paragraph below. The carboxy terminus of the p53 protein acts as an allosteric regulator of sequence-specific DNA binding. This was demonstrated initially by Hupp et al. (1992) using a bacterially expressed protein. Recombinant bacterial p53 bound poorly to DNA, and binding could be enhanced by the addition of antibodies specific to the C-terminal region of the protein. Phosphorylation of Ser315 and Ser392 within this domain also enhance sequence-specific DNA binding. Dephosphorylation of Ser376 of p53 after IR allows the association of 14-3-3 proteins with the C terminus of the protein (Waterman et al., 1998). Stavridi et al. (2001) demonstrate that this interaction is required for p53 to activate the downstream gene, p21waf1/cip1, and for the G1 cell cycle checkpoint arrest response. Interestingly, this dephosphorylation event seems to be ATM-dependent, possibly by a phosphatase…arrow_forward
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