Brock Biology of Microorganisms (14th Edition)
14th Edition
ISBN: 9780321897398
Author: Michael T. Madigan, John M. Martinko, Kelly S. Bender, Daniel H. Buckley, David A. Stahl, Thomas Brock
Publisher: PEARSON
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Textbook Question
Chapter 12.7, Problem 1MQ
- What is the difference between the core and pan genomes of a given species?
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What are two reasons for the wide variation in genome sizes among eukaryotic species?
What is the difference between the core genome and pan-genome? What might you infer if you compare two genera, one in which the size of the core genome and pan-genome are very similar, and one in which the core genome is much smaller than the pan-genome?
What provides a convenient bridge between the low resolution of a karyotype and the ultra-high resolution of a complete genomic sequence?
Chapter 12 Solutions
Brock Biology of Microorganisms (14th Edition)
Ch. 12.1 - What characteristics would have made the surface...Ch. 12.1 - How do we know when oceans were first present on...Ch. 12.1 - What lines of reasoning support the hypothesis...Ch. 12.2 - Why is the origin of cyanobacteria considered a...Ch. 12.2 - What caused the development of banded iron...Ch. 12.2 - What lines of evidence indicate that microbial...Ch. 12.3 - What evidence supports the idea that the...Ch. 12.3 - Prob. 2MQCh. 12.3 - In what ways are modern eukaryotes a combination...Ch. 12.4 - Prob. 1MQ
Ch. 12.4 - Prob. 2MQCh. 12.4 - Prob. 3MQCh. 12.5 - How are DNA sequences obtained for phylogenetic...Ch. 12.5 - What does a phylogenetic tree depict?Ch. 12.5 - Prob. 3MQCh. 12.6 - What are the different processes that give rise to...Ch. 12.6 - What is the difference between selection and...Ch. 12.6 - In the experiment of Figure 13.12, why did the...Ch. 12.7 - What is the difference between the core and pan...Ch. 12.7 - What kind of recombination might have the greatest...Ch. 12.7 - What effects do deletions have on the evolution of...Ch. 12.8 - What is the difference between taxonomy and...Ch. 12.8 - What are some key criteria from the phylogenetic...Ch. 12.8 - How many species of Bacteria and Archaea have been...Ch. 12.9 - What class of genes is used in MLST analyses?Ch. 12.9 - How is ribotyping different from rep-PCR?Ch. 12.9 - What is FAME analysis?Ch. 12.10 - What roles do culture collections play in...Ch. 12.10 - What is the IJSEM and what taxonomic function does...Ch. 12.10 - Why might viable cell cultures be of more use in...Ch. 12 - Prob. 1RQCh. 12 - Prob. 2RQCh. 12 - Prob. 3RQCh. 12 - What is the endosymbiotic hypothesis for the...Ch. 12 - Prob. 5RQCh. 12 - REVIEW QUESTIONS
6. What major physiological and...Ch. 12 - Prob. 7RQCh. 12 - Prob. 8RQCh. 12 - Prob. 9RQCh. 12 - What is the difference between a gene tree and an...Ch. 12 - Prob. 11RQCh. 12 - Prob. 12RQCh. 12 - What is fitness? To what degree does fitness...Ch. 12 - What are some processes that influence the content...Ch. 12 - Prob. 15RQCh. 12 - What is the "species problem" and why is the...Ch. 12 - Prob. 17RQCh. 12 - Prob. 18RQCh. 12 - Prob. 19RQCh. 12 - Prob. 20RQCh. 12 - Prob. 21RQCh. 12 - Compare and contrast the physical and chemical...Ch. 12 - For the following sequences, construct the...Ch. 12 - Imagine that you have been given several bacterial...Ch. 12 - Imagine that you have discovered a new form of...
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- What is the principle behind to Sanger sequencing?arrow_forwardWhat is the difference between core genome and pan genome?arrow_forwardWhat are some reasons why, in multicellular eukaryotes, genome size is not necessarily related to number of protein-coding genes or organismal complexity?arrow_forward
- What does massively parallel sequencing mean?arrow_forwardWhat is the Pan genome ?arrow_forwardThe Japanese canopy plant (Paris japonica) has one of the largest of all eukaryotic genomes, with approximately 150 billion base pairs, about 50 times the size of the human genome. In contrast, the bladderwort Utricularia gibba has one of the smallest plant genomes, with only 82 million base pairs. What predictions can you make about the genomes of these two species?arrow_forward
- what is the concept of minimal genomesarrow_forwardWhat is the difference between the core genome and pan genome? Why might your infer if you compare two genera one is in which the size of the core genome and pan genome are very similar and one is which the core genom is must smaller than the pan genome?arrow_forwardGiven our knowledge of genome sizes in different organisms, would you predict that Homo sapiens or the two-toed salamander (Amphiuma means) has the larger genome?arrow_forward
- Explain how the different “-omics” involved with the three major parts of the central dogma can be used to study this new species. What are molecular techniques/tools (sequencers) that can be used to study each of these? How would you sequence the genome efficiently (i.e., lowest amount of time and money)?arrow_forwardWhy are closure and completeness important in genome sequencing?arrow_forwardThe following two sequences represent the same gene from two different species: Assume that all changes in the third position are synonymous and all in the first and second positions are nonsynonymous. a) How many synonymous sites (positions) are there in the gene? b) How many nonsynonymous sites (positions) are there in the gene? c) How many synonymous substitutions are there between species? d) How many nonsynonymous substitutions are there between species? e) What is the dN/dS ratio? f) What does the dN/dS ratio tell you about the evolution of this sequence? Finally, It has been hypothesized that population size affects genome size. What is the proposed relationship? How can it be explained?arrow_forward
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Genome Annotation, Sequence Conventions and Reading Frames; Author: Loren Launen;https://www.youtube.com/watch?v=MWvYgGyqVys;License: Standard Youtube License