Biochemistry
Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
Bartleby Related Questions Icon

Related questions

bartleby

Concept explainers

Question

The steps of the chymotrypsin mechanisms are listed below (1-7). Put the steps of chymotrypsin mechanism in the correct order. Figure representing chymotrypsin mechanism is given for reference.

a.The portion (N-terminal end) of original substrate with the new C terminus diffuses away

b. Substrate binding
 
                                                                                                               
 
c. His 57 catalyzes removal of H from Ser 195 hydroxyl; Ser 195’s nucleophilic O attacks carbonyl C of substrate; tetrahedral intermediate is formed
 
                                                                                                               
 
d. Water binding; water is deprotonated by His 57; resulting OH nucleophilically attacks carbonyl of remaining substrate; tetrahedral intermediate is formed
 
                                                                                                               
 
e. His 57 donates H to N of peptide bond and tetrahedral intermediate decomposes; the portion of original substrate (the C-terminal end) with the new amino terminus diffuses away
 
                                                                                                               
 
f. The portion (N-terminal end) of original substrate with the new C terminus is formed
 
                                                                                                               
 
g. His 57 protonates O from Ser 195, leading to collapse of tetrahedral intermediate

 

Enzyme-
substrate
complex
Short-lived
intermediate
(acylation)
Chymotrypsin (free enzyme)
Asp
1
2
H
YHis"
His
Active site
R'
AA
Охуanion
hole
Substrate (a polypeptide)
AA-CH -C
HN
H H
-N-C-C-N-C-C-AA
HH
HN
AA
HN
oHN Ser
HN Ser
HN Ser
Hydrophobic H
pocket
Gly
Gly
Product 1
3
Product 2
H H
-C-C-N-C-C-OH
AA
HN-CH-C-AA
Acyl-enzyme intermediate
R
R'
AA-CH
HN
Enzyme-product 2 complex
R
H.
R'
YHis
Ser
H.
AA-CH -C
Gly
HN
R'
Short-lived intermediate*
OHN Ser19
(deacylation)
H
N-
Gly
YHis "
Acyl-enzyme intermediate
R'
AA-CH
YHis"
HN
HN
HN Sers
5
R
Gly
OHN Seras
Gly
expand button
Transcribed Image Text:Enzyme- substrate complex Short-lived intermediate (acylation) Chymotrypsin (free enzyme) Asp 1 2 H YHis" His Active site R' AA Охуanion hole Substrate (a polypeptide) AA-CH -C HN H H -N-C-C-N-C-C-AA HH HN AA HN oHN Ser HN Ser HN Ser Hydrophobic H pocket Gly Gly Product 1 3 Product 2 H H -C-C-N-C-C-OH AA HN-CH-C-AA Acyl-enzyme intermediate R R' AA-CH HN Enzyme-product 2 complex R H. R' YHis Ser H. AA-CH -C Gly HN R' Short-lived intermediate* OHN Ser19 (deacylation) H N- Gly YHis " Acyl-enzyme intermediate R' AA-CH YHis" HN HN HN Sers 5 R Gly OHN Seras Gly
Expert Solution
Check Mark
Knowledge Booster
Background pattern image
Biochemistry
Learn more about
Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, biochemistry and related others by exploring similar questions and additional content below.
Similar questions
SEE MORE QUESTIONS
Recommended textbooks for you
Text book image
Biochemistry
Biochemistry
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:W. H. Freeman
Text book image
Lehninger Principles of Biochemistry
Biochemistry
ISBN:9781464126116
Author:David L. Nelson, Michael M. Cox
Publisher:W. H. Freeman
Text book image
Fundamentals of Biochemistry: Life at the Molecul...
Biochemistry
ISBN:9781118918401
Author:Donald Voet, Judith G. Voet, Charlotte W. Pratt
Publisher:WILEY
Text book image
Biochemistry
Biochemistry
ISBN:9781305961135
Author:Mary K. Campbell, Shawn O. Farrell, Owen M. McDougal
Publisher:Cengage Learning
Text book image
Biochemistry
Biochemistry
ISBN:9781305577206
Author:Reginald H. Garrett, Charles M. Grisham
Publisher:Cengage Learning
Text book image
Fundamentals of General, Organic, and Biological ...
Biochemistry
ISBN:9780134015187
Author:John E. McMurry, David S. Ballantine, Carl A. Hoeger, Virginia E. Peterson
Publisher:PEARSON