
Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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Question
The steps of the chymotrypsin mechanisms are listed below (1-7). Put the steps of chymotrypsin mechanism in the correct order. Figure representing chymotrypsin mechanism is given for reference.
a.The portion (N-terminal end) of original substrate with the new C terminus diffuses away
b. Substrate binding
c. His 57 catalyzes removal of H from Ser 195 hydroxyl; Ser 195’s nucleophilic O attacks carbonyl C of substrate; tetrahedral intermediate is formed
d. Water binding; water is deprotonated by His 57; resulting OH nucleophilically attacks carbonyl of remaining substrate; tetrahedral intermediate is formed
e. His 57 donates H to N of peptide bond and tetrahedral intermediate decomposes; the portion of original substrate (the C-terminal end) with the new amino terminus diffuses away
f. The portion (N-terminal end) of original substrate with the new C terminus is formed
g. His 57 protonates O from Ser 195, leading to collapse of tetrahedral intermediate

Transcribed Image Text:Enzyme-
substrate
complex
Short-lived
intermediate
(acylation)
Chymotrypsin (free enzyme)
Asp
1
2
H
YHis"
His
Active site
R'
AA
Охуanion
hole
Substrate (a polypeptide)
AA-CH -C
HN
H H
-N-C-C-N-C-C-AA
HH
HN
AA
HN
oHN Ser
HN Ser
HN Ser
Hydrophobic H
pocket
Gly
Gly
Product 1
3
Product 2
H H
-C-C-N-C-C-OH
AA
HN-CH-C-AA
Acyl-enzyme intermediate
R
R'
AA-CH
HN
Enzyme-product 2 complex
R
H.
R'
YHis
Ser
H.
AA-CH -C
Gly
HN
R'
Short-lived intermediate*
OHN Ser19
(deacylation)
H
N-
Gly
YHis "
Acyl-enzyme intermediate
R'
AA-CH
YHis"
HN
HN
HN Sers
5
R
Gly
OHN Seras
Gly
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