Title:
Principle and Practice of Gel Electrophoresis.
Aim:
To determine the unknown dyes in Unknown Mix 1 and Unknown Mix 2 from the four known dye samples using gel electrophoresis.
To determine which dye had the most net charge and its macromolecule size.
Introduction:
Gel Electrophoresis is a technique used in Molecular Biology to separate macromolecules based on their size and their charge (negative/positive). For this experiment DNA was analysed, DNA has a negative charge.
There are two unknown mixes of dyes. To determine what dyes they are, 4 known samples were used in this experiment to identify the unknown mixes using agarose gel electrophoresis. The gel electrophoresis will allow you to identify which dye has the most net charge
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This was not noticed until after the wells were filled. This caused the dyes (Mix 1 & 2) to leak into the agarose gel. This makes it very hard to identify mix 1 & 2 as they have leaked into each other but on close inspection when compared to samples, unknown mix 1 can be identified as Xylene Lyanol and unknown mix 2 cannot be identified.
To deal with this problem, masking tape should be used to lower the risk of tears in future experiments. To identify which dye had a large size and weak charge and which had a small size and strong charge was simple, the smallest and strongest charged dyes move down through the gel faster then that of a large and weak charge. In figure 1 it can be seen that the dye in well 6 had the strongest
Figure 1 contains gel electrophoresis for protein samples. The lanes were labeled from 1 to 10 from the right to the left. Lane 1 contained the ladder fragment. Lane 2 contained the filtrate. Lane 3 contained the S1 sample. Lane 4 contained the P1 sample. Lane 5 contained the P1 medium salt sample. Lane 6 contained the P1 high salt sample. Lane 7 contained the S2 sample. Lane 8 contained the P2 sample. Lane 9 contained the P2 medium salt sample. Lane 10 contained the P2 high salt sample.
In this lab, guaiacol, a color changing dye, was used in place of R and turned
1. Record your hypothesis about what will happen when Biuret solution is mixed with the solutions from test tubes 1, 2, 3, and 4 here. Be sure to use scientific reasoning to support your hypothesis.
Add a few drops of food dye to the water until you like the color you see.
The goal of the experiment was to identify Unknown 33A and 33B. Unknown 33A was a white, crystalline solid that had a sweet cherry smell and Unknown 33B was a beige, yellowish color liquid that was translucent and had a viscosity similar to water. Also, the liquid was homogenous and smelled sour, similar to mildew.
Mouth wash |B4|The mouthwash was a yellow color as it was original falvor, after adding bromthymol blue the mixture turned a blue again similar the the pine sol. |
1. Paper Chromatography is a method used for the separation of colors which are also referred to as colored chemicals/substances or pigments. This method is used for experiments, to identify coloring agents and to separate out a compound into its various components.
1) What is the surface area of each of your three cells? The agar cylinder had a surface area of 5.06 cm.
Group 6, which is the 2nd half of the gel picture, does not correspond with Anderson results, no visible binding occurred. This group had two different dyes and SDS included in the mixture also. In Andersons version although two different dyes were used, it didn’t affect his results, it’s the SDS that
5. The final result when all the dye emerges at the downstream side is shown in Figure 1.
This Lab Report is an analysis of the results of a two-part experiment. In the first part, we used a gel filtration column to separate the components of a mixture composed of protein and non-protein molecules. By doing so we hoped to obtain fractions that contained single components of the mixture, while also gaining insight into the relative molecular weight of each component compared to each other. We would then plot these fractions onto nitrocellulose paper in order to determine which fractions had protein. In the second part, we would use the fractions which we had determined had protein to conduct an SDS-PAGE. By doing so we hoped to determine an estimate on the molecular weight of the proteins present in each fraction by comparing it to a tracker dye composed of a variety of molecules of differing molecular weight.
The next step was to place the strip of chromatography paper on a paper towel. Then dip a capillary tube into the plant pigment extract (spinach pigment extract) provided by the teacher. The tube will fill on its own. We applied the extract to the pencil line on the paper, blew the strip dry, and repeated it three to four times until the line on the paper is a dark
Gel-Filtration Chromatography is a commonly used method used in order purify a protein from a mixture, by means of separations. Different biomolecules differ in size, or their molecular weight. In the gel matrix inside the chromatography column, there are gel beads which are porous to allow certain sized molecules to enter. The molecules that are able to enter the pores of the gel, are held in stationary phase and will elute from the column later on, these are usually smaller, to medium sized molecules. Larger molecules that are not able to fit in the pores will elute out of the column first, they are involved in mobile phase where they just go straight through the column without interacting with the gel beads. Smaller molecules will have a higher elution volume, while the larger molecules will have a lower elution volume. The volume to elute the protein is inversely proportional to the molecules size.
3. Bring the charged balloon close to the paper scraps from Part 2. How does the rubbed balloon
Agarose gel electrophoresis is a method of gel electrophoresis used in biochemistry, molecular biology, genetics, and clinical chemistry to separate a mixed population of DNA or proteins in a matrix ofagarose. The proteins may be separated by charge and/or size