MATLAB: An Introduction with Applications
MATLAB: An Introduction with Applications
6th Edition
ISBN: 9781119256830
Author: Amos Gilat
Publisher: John Wiley & Sons Inc
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you are provided with counts of
F1 and F2 offspring with given genders and disease phenotypes.
The data are generated from an initial parental cross.
One parent displays the disease phenotype and one displays the wild-type (WT) phenotype.
The WT parent always has a homozygous genotype.

There are three possible modes of inheritance that underlie
the generation of the data. All are monogenic. They are:

(i)   Autosomal Recessive.
(ii)  Homozygous Lethal Dominant.
(iii) Autosomal Dominant.

One's phenotype is determined by their genotype at the disease locus
and the mode of inheritance, as we have seen with the Punnett Square.

In this assignment you are provided with a computer generated mode of inheritance.
Your task is to perform a chi-square goodness of fit test
on the F2 data and make a decision, based on your statistical analysis, as to whether
you reject or do not reject the computer generated mode of inheritance as being consistent
with the observed data.

The mode of inheritance you are to test on the observed data is autosomal recessive.
 
PARENTAL CROSS
 
Parental cross: Father with disease phenotype, Mother with wild-type phenotype.
 
F1 DATA
 
Phenotype
Gender     Disease     Wild-Type
  Male           18               23
Female         22               17
 
F2 DATA
 
Phenotype
Gender  Disease      Wild-Type
  Male      22                    23
Female    15                   20

 

Gender Phenotype Observed
counts
(O) 
Expected
Proportions 
Expected
Counts
(E) 
(O-E)  (O-E)^2/E 
Male WT 23        
Male Disease 22        
Female WT 20        
Female Disease 15        
Total   80        
          DegFrdm  
          P-value  
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