Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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What is the difference between an enol phosphate and a normal phosphate ester that gives PEP such a high phosphoryl group transfer potential?
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- The enzyme prenyl transferase is responsible for condensing isopentenyl pyrophosphate units during the second stage of cholesterol biogenesis. Which of the following intermediates could still form if prenyl transferase were inhibited? (A) farnesyl pyrophosphate(B) dimethylallyl pyrophosphate (C) squalene(D) geranyl pyrophosphate(E) lanosterolarrow_forwardThe phosphorylation and oxidative decarboxylation of oxaloacetate by inorganic phosphate (Pi) to make phosphoenolpyruvate and carbon dioxide is endergonic under intracellular conditions. It is characterized by this equation: Oxaloacetate + Pi ←→ Phosphoenolpyruvate + H2O + CO2 ΔG’ = +24.6 kJ/mol The synthesis of GTP from GDP and inorganic phosphate (Pi) in solution is endergonic under intracellular conditions, and it is characterized by this equation: GDP + Pi ←→ GTP + H2O ΔG’ = +30.5 kJ/mol Write a new net thermodynamically coupled reaction equation that describes the synthesis of phosphoenolpyruvate from oxaloacetate using the hydrolysis of GTP to power the reaction and calculate the new net ΔG’ of this reaction. Show all of your work.arrow_forwardA seven-residue peptide was found to have an amino acid composition including glu, val, Lys, met, leu, and trp (there is more than one copy of one amino acid). Several reactions on samples of the peptide resulted in the following: a) Trypsin has no effect on the heptapeptide. b) If one cycle of Edman degradation provides the PTH derivative shown below, what does this tell you about the oligopeptide under investigation? [image] c) Chymotrypsin treatment yields a dipeptide, a tetrapeptide, and a free amino acid. Possibilities? d) The tetrapeptide contains val, lys, and met (only). What information does this give you? e) Cyanogen bromide treatment generates a dipeptide, a tetrapeptide, and free Lys. f)What is the sequence of the peptide?arrow_forward
- (b) Biotin is a coenzyme required for a key step in gluconeogenesis. (i) To which enzyme is biotin linked and what is the nature of the bond? (ii) What properties do the biotin and the linkage have that enable biotin to interact with two distinct active sites in this enzyme? (iii) What chemical steps take place at each of these active sites (no need to specify the complete reactions)?arrow_forwardWhich of the following statements are descriptions of metal ion catalysis or examples of metal ion catalysis? Choose all correct answers a Zn²+ cofactor may properly orient the substrate in the active site through ionic interactions. a covalent bond forms between enzyme and substrate lowers the energy or stabilizes the transition state or intermediate catalyst retains its original form after reaction occurs catalysts may participate in oxidation-reduction reactions by changes in the oxidation statearrow_forwardGlucose-1-phosphate has a higher phosphoryl group transferpotential than does glucose-6-phosphate. Review the structures of these molecules and suggest a reason for thisphenomenon.arrow_forward
- Which of an alpha-D-2,3-di-O-methylglucopyranose or alpha-D-2,3, 6-tri-O-methylglucopyranose represents a glucose unit in glycogen which was originally carrying an (alpha 1-->6) glycosidic bond?arrow_forwardIn what major way do quinones differ from other electroncarriers in the membrane?arrow_forwardIn which two ways does the ribulose monophosphate pathwaysave energy over reactions of the serine pathway?arrow_forward
- Draw the products that would be produced from phospholipase C cleavage of a glycerophospholipid with a phosphoserine head group, an alpha linoleic acid attached to C2 of glycerol and a linoleic acid attached to C, of glycerol. Draw these products at pH=1. Be sure to number the fatty acid carbons in your products.arrow_forwardRefer to the reaction scheme of the GAPDH catalyzed formation of 1,3-BPG. In the reaction, the nucleophile in step (4) is an inorganic phosphate molecule. The enzyme active site is elaborately constructed so that inorganic phosphate, not water, acts as the nucleophile. What advantage is gained by using inorganic phosphate, instead of water, as the nucleophile? Discuss in terms of the energy yield of glycolysis. No need to calculate the total net energy yield of glycolysis.arrow_forwardWhy does PGAL have the highest potential energy of glycolysis?arrow_forward
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