Two DNA strands of length 100 (number of bases in the sequence) are given in DNA1.txt and DNA2.txt file. Find the longest common subsequence (LCS) between the two sequences using dynamic programming bottom-up (tabulation) approach. Submit your code to solve the problem. How much time (in seconds or milliseconds) is required by your computer to run the algorithm?
Two DNA strands of length 100 (number of bases in the sequence) are given in DNA1.txt and DNA2.txt file. Find the longest common subsequence (LCS) between the two sequences using dynamic programming bottom-up (tabulation) approach. Submit your code to solve the problem. How much time (in seconds or milliseconds) is required by your computer to run the algorithm?
Chapter10: Application Development
Section: Chapter Questions
Problem 9VE
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Problem 1.
Two DNA strands of length 100 (number of bases in the sequence) are given in DNA1.txt and DNA2.txt file.
- Find the longest common subsequence (LCS) between the two sequences using dynamic
programming bottom-up (tabulation) approach. Submit your code to solve the problem. How much time (in seconds or milliseconds) is required by your computer to run thealgorithm ? - Solve the same LCS problem using dynamic programming top-down (memorization) approach. Submit your code to solve the problem. How much time (in seconds or milliseconds) is required by your computer to run the algorithm.
- Which solution is faster and why? Discuss your solutions.
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