Biochemistry
Biochemistry
9th Edition
ISBN: 9781319114671
Author: Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher: W. H. Freeman
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Question

The side chain of which of the following amino acids is most hydrophilic

a.

Phe

b.

Val

c.

Leu

d.

Cys

e.

Ala

 

Expert Solution
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Hydrophobicity plot

The hydrophobicity or hydrophilicity of the amino acids in a protein is quantitatively analysed using a hydrophilicity plot. It is used to describe or pinpoint a protein's potential structure or domains.

-The plot's x-axis represents the amino acid sequence of a protein, and the y-axis represents the degree of hydrophobicity and hydrophilicity.

- The degree of interaction between particular amino acids and polar solvents like water can be determined using a variety of techniques. For instance, the Hopp-Woods scale assesses hydrophilic residues while the Kyte-Doolittle scale identifies hydrophobic amino acids.

Hopp-Woods scale - The Hopp-Woods hydrophilicity scale of amino acids is a technique for ordering amino acids in a protein according to their water solubility in order to look for surface locations on proteins, particularly those locations that tend to form strong interactions with other macromolecules like proteins, DNA, and RNA.

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