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Protein Chain Reaction Lab Report

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Proteins are responsible for things like enzymes, antibodies, structure, transport, storage, and messaging. In order for proteins to function properly and provide these functions in the body, deoxyribonucleic acid is (DNA) required. DNA provides ribonucleic acid (RNA) that is translated into a certain protein. These concepts lay the foundation for labs 5 through 7.
In lab 5, a series of steps were taken that allowed us to obtain purified genomic DNA. Polymerase chain reaction (PCR) was utilized in order to acquire the specific gene that encodes for the protein adhP. PCR works by using different temperatures and properties of DNA replication (i.e. DNA polymerase) in order to amplify the gene needed. To see if our PCR ran at the end of lab 5 …show more content…

DNA is a negative molecule so it will move towards our anode (positive end) as the small fragments will move faster and the large ones slower. With a DNA ladder, we could compare the size of the gene we needed to the marker with a known size. TOPO cloning along with transformation were then carried out. With help from DNA topoisomerase, TOPO cloning uses our gene from the PCR reaction and places it within our vector (pET101/D-TOPO) via directional cloning. Directional cloning allows us to control the direction of our insertion. During this procedure, we had to be careful not to mix too thoroughly in order to keep the overhangs necessary intact. Also a master mix containing salt allowed for a higher efficiency due to the fact that the salt prevents the topoisomerase from rebinding thus potentially nicking the DNA post ligation. Heat shock was then used in order to ensure that our plasmids were placed within the bacterial cells. The cells containing this plasmid could then be placed on an LB plate with S.O.C. medium containing ampicillin. The S.O.C. medium contains nutrients that allowed our transformed cells to survive and thrive. Ampicillin kills certain bacterial cells that do not contain a resistance towards it. Our new transformed cells had this resistance so it ensured that the colonies formed during incubation did in fact have the gene we were looking

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