Diphtheria toxin (DT) is a secret protein of Corynebacterium diphtheria that is consisted of 535 amino acid with three domain structure, including the catalytic domain (C-domain) the transmembrane domain (T-domain), and the receptor binding domain (R-domain) . Translocation makes the native disulfide bond between residuesCys186 of the C-domain and Cys201 of the T-domain is reduced and the C-domain is released into the cytoplasm1 .All studies agree that the helical organization of the T domain interacting with a membrane is maintained2. The T-domain consists of nine helices of various lengths (TH1-TH9), eight of which completely surround the most hydrophobic one, TH8. Helices 1 through 4 do not penetrate into the membrane, apparently, and are …show more content…
The core of the structure of the C-domain in whole DT is formed by eight β-strands forming two sheets of three and five strands, respectively. These two sheets are surrounded by six short α-helices6. The active site of the C domain is located in a cleft formed by three beta strands named CB2, CB3, CB7, a helix, CH3, and a loop, CL2. The loop CL2 including amino acids 32-54 which covers active site, becomes disordered from residues 39 to 46 upon binding of NAD7. This suggests a potential role for this loop in the recognition of the ADP-ribose acceptor substrate, EF-2. The ADP-ribosylation reaction has been proposed to proceed by a direct displacement reaction, with the pi-imidazole nitrogen of diphthamide being activated by Glu148 for nucleophilic attack on the N-glycosidic bond of NAD8. The loop of 14 amino acid residues linking the C domain to the T domain must be cleaved in order to activate DT9. More work is still needed to fully understand the mechanism of translocation of DT. The precise molecular and dynamic description of the contacts between the T and the C-domains, the cell membrane and maybe other cell components remain to be
Then the tRNA molecules link together and transfer the amino acid to the ribosome. An Anticodons pair with a codon takes the
The GLAT enzyme itself belongs to the histidine triad super family and is a member of branch III. This enzyme shows specific nucleoside monophosphate activity and is a homodimer with each monomer containing a single domain comprised of 6 α- helices and a β-sheet which is formed by 13 antiparallel and 1 parallel strand. The mechanism of this enzyme is described as having ping-pong kinetics with the following two steps. In the first step the active site histidine attacks R-phosphorus of UDP-glucose which displaces glucose-1-phosphate and forms a covalent intermediate. The second step involves the previously formed intermediate reacting with galactose-1-phosphate to displace the histidine and produce UDP-galactose. (Facchiano, 103-104).
difficile lies within the 19.6 kb pathogenicity locus (PaLoc) and codes for two major virulence factors and three accessory proteins [9]. Genes tcdA and tcdB encode Toxin A and Toxin B, respectively, the two major virulence factors which are part of the clostridial glucosylating toxin family [10]. Both catalyze the inactivation of Rho-GTPases, which are essential for the regulation of eukaryotic cell cytoskeleton [9]. The inactivation of Rho-GTPases causes cell death via cytoskeletal disorganization [9]. The accessory gene functions are as follows; tcdE as a putative holin protein; tcdD as a positive regulator and tcdC as a negative regulator, both of which are controlling Toxin A and B gene expression
The genome of E. coli 0157:H7 was recently sequenced and contains 1,387 new genes absent in non pathogenic strains. Analysis of the genome suggests that there are a variety of potential virulence genes that have yet to be explored, including fimbrial and other adhesions, secretion systems, and toxins. Many of the virulence genes are similar to those associated with pathogenesis in Salmonella and Shigella. Most of them are found on pathogenicity islands from viral DNA that is transmitted to the bacteria through the activity of a lysogenic phage. The two most important toxins, Stx1 and Stx2 (for shiga-toxin) are found on such islands and are composed of 5 B subunits surounding an active A component, which is transported into the cell after the
bonds and taking a glucose molecule off of the structure (Ball, Vialle, Alonso-Casajus, Duavillee, Munoz, Baroja-Fernandez, Moran-Zorzano, Eydallin, Pozueta-Romero, 2006). The conditions for the reaction of Phosphorylase and
Second, in order to further confirm the information about characteristics and function of the targeting protein that we have
Before the establishment of the NHS in 1948, many of working family suffer from lack of access to hospital care and Lack of access to health care (Matthews 2009). In Wales the people of village or town looked after their own, and help was usually at hand. Of course, such help was usually basic (Carradice 2015). Life in the 20th century, existed of poverty and dirty conditions. Life expectancy in 20th century for men were 48 years old and for women everyday experience like childbirth can be life threating (Williams 2013). In the 19th century 150 in 1000 infant died before there 1st birthday (Williams 2013). Midwifes in the 19th century were untrained, unregulated and unpaid; this all changed in 1902 when the 1st state regulation of midwives
It is when C. difficile becomes pathogenic and this is where it produces lots of toxins.
For the second part of the experiment, one had to use the knowledge learn from viewing protein molecules in FirstGlance in Jmol to analyze the protein PDB ID: 4EEY. The analysis of this protein was done using the RSCB protein data bank (PDB) at (http://www.rcsb.org/pdb/home/home.do).2
What is the frequency of Botulinum Toxin? The incidence of the disease is low, but the mortality rate is high if not treated immediately and properly. (U.S. Food and Drug Administration, 2015) The United States has averaged one hundred forty five reported cases of Botulism a year. Fifteen percent of those being foodborne, sixty-five percent being infant Botulism, and twenty percent being wound Botulism. (CDC, 2015) The frequency of the disease is low, but the mortality rate is high if not treated immediately and properly. Some cases of botulism may be undiagnosed or misdiagnosed because the symptoms are transient or mild, and mimic Guillain-Barre syndrome.
The primary protein structure can be likened to a human chain in which each person is assumed to be an amino acid and their hands viewed as the carboxyl and amino groups. The person on one end of the chain, who has a free left hand, is assumed to be the free carboxyl group. The person on the other end, who has a free right hand, is assumed to be the free amino group. Everyone in this chain has a left hand linked to somebody’s right hand and a right hand linked to somebody else’s left hand forming peptide bonds. The heads and legs just like the side chains and hydrogens, do not take part in the linking.
Although TRAV4*01 type II TCR engaged mCD1d-α-Glc-A-DAG in type I NKT TCR-like recognition mode, an apparent difference was observed in regard to their relative TCR/CD1d interface. Namely, In TRAV4*01 type II TCR complex, the TCR interacted predominately through non-germline encoded CDR3 loop region, with both the α- and β-chain contributing equally to the BSA of TCR/CD1d interface, whereas the interaction in type I NKT TCR-mCD1d-Ag is largely germline-mediated and primarily driven by the CDR loop region encoded within the α-chain (Rossjohn et al., 2012). However, the TRAV4*01 TCR-mCD1d framework was found to be more similar to that of type II TCR-CD1d complexes determined to date. It, therefore, remains an interesting question as to why TRAV4*01 type II TCR required a type I NKT TCR-like recognition mode to establish type II NKT TCR footprint? It may be possible that TRAV4*01 type II TCR prerequisite type I like docking mode for its positive selection in the thymus. Interestingly, the tyrosine motif (Tyr49β & Tyr51β) of CDR2β which is regarded as a “key recognition codon” central to the binding orientation of the majority of type I NKT TCR population (Wun et al., 2008) is
This is done by means of the aminoacyl attachment site (the site at which the amino acid is attached to the tRNA molecule). Each tRNA molecule, by means of their anticodons (a sequence of three exposed free bases complimentary to that of the codons on
Mitochondria and chloroplasts have two membranes that surround them. The inner membrane is probably from the engulfed bacterium and this is supported by that the enzymes and proteins are most like their counterparts in prokaryotes. The outer membrane is formed from the plasma membrane or endoplasmic reticulum of the host cell. The electron transport enzymes and the H+ ATPase are only found in the mitochondria and chloroplasts of the eukaryotic cell. (2)