Differential Staining and Testing for Antibiotic Production
Currently, antibiotic resistance is a major concern when it comes to public health and food security. The purpose of this research is to isolate bacteria from the soil capable of antibiotic production. A local soil sample was collected and diluted through a series of serial dilutions to limit bacterial growth between 30-300 colonies, so single colonies were isolated. Single colonies were isolated onto a master plates based on variations in colony shape, edge, color, and elevation. Those that were most favorable produced a zone of inhibition in which an antibiotic was produced inhibiting the growth of neighboring bacterial colonies. Master plate colonies were then plated using
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Antibiotics resistance occurs when bacteria change their structure as a mechanism for survivor. Once bacteria become resistant to antibiotics the illness they cause become more severe and thus treatment becomes hard then those caused by non-resistant bacteria. The second biggest threat to public health is the diminishing of effective antibiotics resulting from microbial antibiotic resistance.
Soil with its abundance of microbes has become the focus for new antibiotic resistance. This is particularly relevant because a large number of antibiotics is from soil bacteria or fungi. By isolating bacterial colonies from the soil the ability to produce antibiotics is tested ESKAPE pathogens. ESKAPE pathogens are used are being used in testing protocol as these organisms often become antibiotic resistant and cause a large number of hospital-acquired infections. The use of ESPAKE organisms allows for demonstration of antibiotic production against such pathogens which are clinically relevant organisms.
Methods
The soil samples used were gathered from Beaver Creek Road/450th LN North of Hay Springs, exact location (42.801858, -102.728178). Sample was taken from inside bank at Kadlecek Reservoir at a depth of 66.802 cm. At the collection site, water was still with a low flow creek running into reservoir with vast amounts of aquatic vegetation. Soil color was dark black, very saturated and contained no odor. A sterile collection tube was used to gather soil sample.
As predicted the E. coli colony transformed with either the PUC18 or the lux plasmid developed an ampicillin resistance. Which made it easier for them to not only survive but also replicate in both the LB agar plates and the LB ampicillin rich agar plate. However the E. coli colony not treated with the plasmids could not survive and colonize in the LB ampicillin rich agar plates. The plate that had no ampicillin in its environment and no plasmid treated E. coli served as a positive control for this experiment because it demonstrated how the E. coli would colonize and grow in a normal setting. The cells in the positive control plate grew into lawn colonies because they were not placed into a selective environment or transformed, so they had no need to acquire ampicillin resistance. Two plates in the experiment contained E. coli cells that were transformed with either the PUC18 or the lux plasmid but were placed in an ampicillin free environment. These two colonies grew
In this experiment, the soil sample that was used in the first experiment was used for even further characterization. A colony was chosen from one of the group member’s bacteria and was amplified with PCR and had gel electrophoresis conducted in order to obtain a sequence. The purpose of this was to figure out the DNA base sequence of the 16S RNA gene from the group member’s colony that was chosen. Then, the BLAST website would be used to determine what the unknown organism was based on the sequence. Additionally, each of us performed a line streak with Streptomyces, E. coli, and S. epidermidis in order to test for the presence of antibiotics.
The possible organisms in this lab included: Serratia marcescens, Escherichia coli, Bacillus subtilis, Sarcina lutea, Micrococcus luteus, Pseudomonas fragi, Staphylococcus epidermidis, Alcaligenes faecalis, Micrococcus roseus, and Clostridium sporogenes.1 In start of the elimination process, the two nutrient agar plates that were made by unknown tube number two were observed and characterized by their colonies. Gram positive: Plate A was incubated at 37 C and had a colony appearance of bright yellow dots on the nutrient agar. This eliminated the possibilities of S. marcescens, E. coli, B. subtilis, P. fragi, S. epidermidis, A. faecalis, M. roseus, and C. sporogenes. S. marcescens colonies are red; M. roseus colonies are orange; E. coli and A. faecalis colonies are beige; B. subtilis, C. sporogenes, and S. epidermidis colonies appear in white.2 This left
Whole mount preparations were prepared using nerves which were harvested from animals sacrificed using Ketamine 40-100 mg/kg IP and Xylazine 5-13 mg/kg IP. Animals underwent transcardial perfusion with 500 ml of 0.9% saline, followed by 500 ml of ice-cold 4% paraformaldehyde in 0.1 M phosphate buffer.
This is important in the medical field because identification of unknown bacteria can help treat a patient by knowing the contributing source of a disease. Also knowledge of different bacteria helped others make antibiotics used today. This lab was completed by using the methods learned thus far in identification of bacteria.
After analyzing the data recorded for both the agar plates containing ampicillin and those that did not, it can be concluded that the data provides enough evidence to reject the null hypothesis. There is enough evidence to support the alternative hypothesis stating that there is a correlation between plasmids coding for an antibiotic resistant gene and bacterial growth in ampicillin. When a bacterial solution containing either pUC18 or the lux plasmid is transformed in an agar plate containing ampicillin, only those cells which took in the plasmid are able to survive and replicate, forming individual colonies. Not all cells are transformed though, the chances of a successful transformation were extremely low. In order to see which cell transformed the cells were tagged according to their plasmid, in the plates containing pUC18 the only
Coli. The first standard E. Coli has no resistance plasmid while the second strain contains a resistance plasmid with genes protecting it from ampicillin. This standard E. Coli and pAMP (plasmid-Ampicillin) E. Coli were each streaked across plates containing the antibiotic and containing growth supportive Lurithea Broth. The purpose of this lab was to test their growth in each medium. Our hypothesis was that while the ampicillin resistant E. Coli would show growth in both LB and LB-AMP plate, the standard E. Coli would only grow in the LB plate for it contains no resistant plasmids against the
E.coli outbreaks have steadily grown over the last few decades. An expansion in big farming has led to E. coli not only being found in meat, but vegetation as well, due to waste runoff. This has increased our need for adequate antibiotics that can fight bacteria, like E. coli. The best way to pinpoint which antibiotics work is by measuring their ability to create antimicrobial agents or zones of inhibition. When a paper disc that has been saturated in an antibiotic is inserted in a solution of E.coli and medium, the zone of inhibition will be noted as the clear ring that forms around the disk. The antibiotics efficacy is then determined by measuring each disk zone of inhibition, and comparing these measurements to the zone measurements of an untreated specimen. If an antibiotic is to be deemed sufficient for treating E. coli it should show a zone of inhibition that is at least double the size of the untreated specimen.
The purpose of this experiment is to show how different concentrations of Ampicillin affect Escherichia Coli Growth and how the bacteria become resistant to the antibiotic drug. Through a series of steps, which involves streaking agar plates with E.coli sample and application of ampicillin to the E.coli sample on the agar plate, the experiment yields a result that supports the hypothesis. The hypothesis acclaims that ampicillin would affect the growth of E.coli; measuring the zone of inhibition approves the claim in the experiment. The measurements of the zone of inhibition indicate that the generation of E.coli expands as the radius reduces. The reduction of the radius shows the E.coli population is reducing and becoming resistant. In other
In this experiment, each student was randomly assigned with a different species of gram- negative bacteria. The organism that I was assigned was Unknown #16. The identity of the gram-negative bacteria was determined to be Escherichia coli. The purpose of this report is to describe the various tests that helped develop a better understanding of the unknown microorganism in terms of the physiology, morphology, motility, and antimicrobic sensitivity it is characterized with. Indole production, hydrogen sulfide, and the colony morphology on the Eosin-methylene blue (EMB) plate, were the critical results that led to the conclusion that the organism was E. coli. In the indole production test, E. coli was one of two organisms,
Three of the four quadrants were labeled S, P, T, for streptomycin, penicillin, and tetracycline. One quadrant was left blank for the control (Figure 1.1) Having a control of no antibiotic was used to show the growth of the bacteria when it is uninhibited by antibiotics. Then, Escherichia coli K12 from VWR (catalog #470179-082) and Staphylococcus aureus from VWR (catalog #470179-208) were evenly swabbed across the surface of the agar plate with a cotton swab; ten plates, contained E. coli and the other ten plates contained S. aureus. Then, Streptomycin (10 μg/mL), Penicillin (10 U = ~10 μg/mL), and Tetracycline (30 μg/mL) were obtained and placed into the middle of their respective quadrants. After this, the agar plates were stacked into two stacks of five, for each bacteria, were wrapped with parafilm, and were incubated at 37°C for 48 hours (Figure 1.2). After 48 hours, the plates were moved to a refrigerator at 4°C, until they were taken out of the fridge approximately a week after the stacks of agar plates had initially been placed in the incubator. The diameters of the zones of inhibition were then measured with a ruler and recorded to the nearest millimeter. After measuring the zones of inhibition, a gram-staining technique was used to illustrate the difference in cell wall structure between S. aureus and E. coli. First, a small sample of each species of bacteria was transferred with a loop from the agar plate onto two different areas on a microscope slide that had previously been washed, wiped with alcohol, and dried. Then a drop of water was added to each bacterial sample, was smeared into a thin layer, then allowed to air dry. Once the bacterial samples were dry, the slide was held at one end and was passed through a Bunsen burner flame with the smeared-bacteria samples facing up.
Introduction The purpose of this experiment was to test whether the soil from outside the Suprenant building contained the highest level of bacteria out of our three samples: soil, human lips, and a toilet seat. We determined that the soil should contain the highest level of bacteria. A teaspoon of soil can contain anywhere from 100 million to 1 billion bacteria (Ingham n.d.). This was the basis for our assumption that the soil would contain the highest levels of bacteria.
According to a study conducted in a Tunisian Hospital, E.coli resistance rate to ampicillin was 72.1% (Ferjani et al., 2014). Furthermore, penicillin was found to be least effective against E.coli with a 100% resistance rate during a research done in trying to comprehend the patterns of antibiotic susceptibility of bacteria (Saba et al., 2014). E.coli found in the intestinal contents of pigs was found to be 57.7% resistant to streptomycin (Lee et al., 2014). Situated on these past research and studies, if a tryptic soy agar plate in applied with E.coli and separated into four different quadrants with three quadrants having an antibiotic disk and one having the control disk, then the results will show E.coli to be most resistant to penicillin, somewhat resistant to ampicillin and least resistant to
Antibiotic resistance is when microorganisms, such as bacteria, are able to survive an exposure to antibiotics and these bacteria are now resistant to the effects of these antibiotics. Antibiotic resistance in bacteria has been an issue since antibiotics were discovered. The fact that bacteria can become resistant to our medical treatments such as antibiotics is a natural evolutionary process, but there are certain human contributions that definitely speed up the process. For example, one of the main contributions that will be discussed is the problem of over prescription of the antibiotic drugs. The
The overuse of antibiotics is creating stronger germs; some bacteria is already resistant to antibiotics. Therefore, when bacteria become resistant to antibiotics, it is difficult and costly to treat that infection. The treat to a serious bacterial infection is a big threat to public health.