Which of the following is not a reason we often perform metagenomics studies by doing PCR using long degenerate primers for the 16S gene? Eliminates issue of having to randomly fragment DNA for sequencing (which can sometimes be tricky to optimize) All microorganisms have a 16S gene It is taxonomically informative and allows you to identify taxa using a database You can estimate relative taxa abundance by relative read abundance, avoiding genome size bias. You can make a phylogeny allowing you to do diversity analyses 16S has conserved regions and the primers used allow for some sequence variation, so we can amplify the region from different taxa efficiently using PCR
Which of the following is not a reason we often perform metagenomics studies by doing PCR using long degenerate primers for the 16S gene? Eliminates issue of having to randomly fragment DNA for sequencing (which can sometimes be tricky to optimize) All microorganisms have a 16S gene It is taxonomically informative and allows you to identify taxa using a database You can estimate relative taxa abundance by relative read abundance, avoiding genome size bias. You can make a phylogeny allowing you to do diversity analyses 16S has conserved regions and the primers used allow for some sequence variation, so we can amplify the region from different taxa efficiently using PCR
Human Heredity: Principles and Issues (MindTap Course List)
11th Edition
ISBN:9781305251052
Author:Michael Cummings
Publisher:Michael Cummings
Chapter15: Genomes And Genomics
Section: Chapter Questions
Problem 7QP: Which of the following is NOT an activity carried out in the field of bioinformatics? a. collecting...
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Which of the following is not a reason we often perform metagenomics studies by doing PCR using long degenerate primers for the 16S gene?
Eliminates issue of having to randomly fragment DNA for sequencing (which can sometimes be tricky to optimize) |
||
All microorganisms have a 16S gene |
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It is taxonomically informative and allows you to identify taxa using a database |
||
You can estimate relative taxa abundance by relative read abundance, avoiding genome size bias. |
||
You can make a phylogeny allowing you to do diversity analyses
|
||
16S has conserved regions and the primers used allow for some sequence variation, so we can amplify the region from different taxa efficiently using PCR |
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