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- 2. Draw all three structures in the mutarotation equilibrium of (a) d-gulopyranose and also of (b) d- altropyranose. Look up the major structure found in this equilibrium and offer a brief explanation based on the anomeric effect.1. A certain polypeptide was treated with trypsin and yielded the following Fragments: Leu-Glu Gly-Tyr-Asn-Arg Gln-Ala-Phe-Val-Lys The same polypeptide was treated with chymotrypsin and yielded the following fragments: Gln-Ala-Phe Asn-Arg-Leu-Glu Val-Lys-Gly-Tyr What is the amino acid sequence of this polypeptide? Instructions Make use of the table below to determine the sequence of the mystery protein.2. Amino acid analysis of the a heptapeptide gave the following residues: Asp Glu Leu Lys Met Tyr Trp NH4+ The following facts were observed: a) Trypsin treatment had no effect. b) The phenylthiohydantoin released by Edman degradation was -C-CH₂ What is the amino acid sequence for this heptapeptide? OH c) Brief chymotrypsin treatment yielded several products including a dipeptide and a tetrapeptide. The tetrapeptide contained Glu, Leu, Lys and Met is some order. d) Cyanogen bromide treatment afforded a tetrapeptide that had a net positive charge at pH 7 and tripeptide that had a zero net charge at pH 7.
- 1. Choose the proper structure of the predominant form of L-M-L-P-D-T at pH 5. Provide a short explanation. 2. Choose the proper structure of the predominant form of L-A-L-Y at pH 11. Provide a short explanation.2. Amino acid analysis of the a heptapeptide gave the following residues: Asp Glu Leu Lys Met Tyr Trp NH4+. The following facts were observed: Trypsin treatment had no effect. The phenylthiohydantoin released by Edman degradation was OH H C-C-CH₂ H. Brief chymotrypsin treatment yielded several products including a dipeptide and a tetrapeptide. The tetrapeptide contained Glu, Leu, Lys and Met is some order. Cyanogen bromide treatment afforded a tetrapeptide that had a net positive charge at pH 7 and tripeptide that had a zero net charge at pH 7. What is the amino acid sequence for this heptapeptide?9. The T conformation of the hemoglobin tetramer is stabilized (in part) by a salt linkage between the side chain of the lysine residue at position 40 in the a-chain of one aß dimer and the C-terminal carboxylate group of the ß-chain of the opposing aß dimer. Draw a diagram of this salt linkage (show complete side chains).
- 2. Draw the structure of pentapeptide Trp-Asp-Cys-Lys-Gln that would predominate in aqueous solution at pH=5.5. (Relevant pKa values are 2.2, 3.8, 8.3, 9.6 and 10.5.)15. Which of the following glycans can be released from proteins using BB- elimination? a. Complex N-linked glycans b. Glycosaminoglycans c. Mucin type O- glycans d Hyaluronic acid 16. Which of the following glycans are made by the addition of sugars to the reducing end of a growing glycan chain? a. Hyaluronan b. Heparan sulfate c. Mucin type O-glycans d. Gangliosides e. Cellulose 17 Name the following ganglioside using GNX nomenclature? 2002) Please draw a-mannose 1,4' B-talose.
- 2. A mixture of the following amino acids (glu, leu, val, arg, ser, phe) was obtained upon complete hydrolysis of a hexapeptide. a. Edman’s reagent releases leucine b. Hexapeptide with carboxypeptidase releases serine. c. Hexapeptide with trypsin forms a tripeptide A with leucine at the N terminal and tripeptide B with valine at the N terminal. d. Tripeptide A with carboxypeptidase releases arginine and a dipeptide with glutamic acid at C terminal. e. Tripeptide B with chymotrypsin form releases serine and another dipeptide. Give: 1. the amino acid sequence of tripeptide A and B. 2. the amino acid sequence in the above hexapeptide.1. Gemtuzumab and Trastuzumab emtansine are two examples of mAb-drug conjugates (ADCS) where the thiol-containing drugs calicheamicin and DM1, respectively, are attached to the mAb's via the linkers shown below. SO, Na „SH Thiolhydrazide in Gemtuzumab Sulfo-SMCC in Trastuzumab emtansine (i) Show the chemistry involved in conjugating the drug (Calicheamicin-SH) to the antibody in Gemtuzumab and draw the target mAb-drug conjugate with a detailed linker region. Show the chemistry involved in conjugating the drug (DM1-SH) to the antibody in Trastuzumab and draw the target mAb-drug conjugate with a detailed linker (ii) region.2. Of the two sequences, which is more likely to have helical structure. Explain. a) -Glu-Asp-Glu-Glu-Asp-Leu- b) -Glu-Leu-Asp-Arg-Val-Lys-